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Table of contents
Introduction & Objectives 1 Background
I. Chapter 1 Distribution of Oenococcus oeni populations in natural habitats.
1. Introduction
2. O. oeni: The wine LAB
3. The sister species O. kitaharae and O. alcoholitolerans
4. Wine: the favorite habitat
5. Vineyard and cellar: the origin of wine strains
6. Apple cider: the second home
7. Other natural habitats
8. O. oeni strains diversity: methods and applications
9. Diversity of strains in wine and other products
10. Diversity of strains in regions and the concept of microbial terroir
11. Diversity in the O. oeni Pan-Genome
Results
II. Chapter 2 Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains
III. Chapter 3 Biodiversity of bacteria and Oenococcus oeni during alcoholic and malolactic fermentation in conventional and organic red wines
IV. Chapter 4 Comparative analysis of wine adaptation in Oenococcus oeni and Oenococcus alcoholitolerans



