Control and Observation of Microbial Communities

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Table of contents

Part 1: Introduction and overview 
1 General Introduction
1.1 Background and motivation
1.1.1 The defi COSY
1.2 Robust output feedback MPC
1.3 State of the art
1.4 Thesis outline
1.5 Publication list
1.5.1 Peer-reviewed international journals
1.5.2 Peer-reviewed international conferences
Part 2: Control and Observation of Microbial Communities 
2 Introduction to the overall framework
2.1 Introduction
2.1.1 The competition model
2.1.2 The COSY model
3 Observation of Heterogeneous Communities
3.1 Introduction
3.2 Estimating microbial co-cultures
3.2.1 Observability analysis
3.2.2 Estimation of H, Bp and Bc
3.2.3 Estimation of G and A
3.2.4 Numerical example
3.2.5 Part conclusion
4 Control of Heterogeneous Communities
4.1 Introduction
4.2 A discussion on controllability
4.3 Controlling competing species
4.3.1 A gentle motivation for a robust approach
4.3.2 Design of the control architecture
4.3.3 Numerical example
4.4 Control of the COSY model
4.4.1 Ensuring coexistence through state feedback
4.4.2 Numerical example
4.5 Part conclusion
Part 3: Robust Output Feedback Model Predictive Control 
5 MPC using interval estimators
5.1 Introduction
5.1.1 Preliminaries
5.2 OF-MPC for LTI systems
5.2.1 Design of interval estimators
5.2.2 Control design
5.2.3 An extension to linear time-delayed systems
5.2.4 Numerical illustration
5.3 OF-MPC for LPV systems
5.3.1 Design of interval estimators
5.3.2 Control design
5.3.3 Numerical illustration
5.4 Design of the predictive controllers
5.5 Complexity and performance
5.6 Numerical examples
5.6.1 The LTI case
5.6.2 The LPV case
5.7 Part conclusion
Part 4: General Conclusions and Outlooks 
6 General Conclusions and Outlooks