Modelling Nested Population Dynamics

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Table of contents

Introduction 
1 Historical Perspectives 
2 Darwinian Properties 
3 Neutral Diversity in Experimentally Nested Populations 
3.1 Modelling Nested Population Dynamics
3.2 Modelling Neutral Diversity
3.3 Artificial selection of droplets
3.4 Discussion
Appendix
4 Locating Mutations in Collective-level Genealogies 
4.1 The cheat as first propagule hypothesis
4.2 Establishing collective level genealogies
4.3 Survival probability estimation
4.4 Propagating sequencing information to the full genealogy
4.5 Discussion
5 From Particles Traits to Collective-level Demography 
5.1 Evolution of collective survival and reproduction
5.2 Trade-off between survival and reproduction
5.3 Particle dynamics
5.4 Collective Population Dynamics
5.5 Migration between collectives
5.6 Discussion
Appendix
6 An Ecological Recipe for the Evolution of Collective-level Heredity 
6.1 Results
6.2 Discussion
6.3 Stochastic Model
6.4 Lotka-Volterra deterministic particle ecology
Conclusion 
Bibliography