Double-stranded RNA (dsRNA)

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Table of contents

GENERAL INTRODUCTION
A BRIEF OVERVIEW OF VIRUSES
PLANT VIRUSES: DIVERSITY WAS MUCH UNDERESTIMATED
APPLICATION OF HIGH THROUGHPUT SEQUENCING (HTS) IN PLANT VIROLOGY
CRITICAL METHODOLOGICAL POINTS FOR THE IMPLEMENTATION OF THE “WET LAB” PART OF HTS-BASED PLANT VIRUS METAGENOMICS
CRITICAL METHODOLOGICAL POINTS FOR THE IMPLEMENTATION OF THE “DRY LAB” BIOINFORMATICS PART OF HTS-BASED PLANT VIRAL METAGENOMICS
GENERAL FEATURES OF PLANT-ASSOCIATED VIROMES
DIFFERENT VIRUS INFECTION PATTERNS IN CROPS AND IN WILD PLANTS?
SCIENTIFIC QUESTIONS ADDRESSED IN THE PRESENT THESIS
CHAPTER Ι MANUSCRIPT  » CROP AND WILD PLANTS/WEED SPECIES-ASSOCIATED IROMES IN A HORTICULTURAL CONTEXT: DIVERSITY, PREVALENCE AND STABILITY OVER A TWO-YEAR PERIOD »
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
CHAPTER Ⅱ MANUSCRIPT  » PHYTOVIROME ANALYSIS OF WILD PLANT POPULATIONS: COMPARISON OF DOUBLE-STRANDED RNA (DSRNA) AND VIRION-ASSOCIATED NUCLEIC ACIDS (VANA) METAGENOMIC APPROACHES 
ABSTRACT
INTRODUCTION
RESULTS
DISCUSSION
MATERIALS AND METHODS
REFERENCES
CHAPTER Ⅲ SUMMARY
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
ANNEX A – ADDITIONNAL DATA ON REPRODUCIBILITY OF PHYTOVIROME COMPOSITION ANALYSIS USING RANDOM WHOLE GENOME AMPLIFICATION
ANNEX B – ADDITIONNAL DATA ON THE COMPARISON OF TWO DNA EXTRACTION KITS AND OF ITS1 AND ITS2 AMPLICONS FOR THE ANALYSIS OF FUNGAL COMMUNITIES
CHAPTER Ⅳ MANUSCRIPT  » METAGENOMIC ANALYSIS OF VIROME CROSS-TALK BETWEEN CULTIVATED SOLANUM LYCOPERSICUM AND WILD SOLANUM NIGRUM »
ABSTRACT
INTRODUCTION
MATERIALS AND METHODS
RESULTS
DISCUSSION
REFERENCES
DISCUSSION AND PERSPECTIVES
KEY METHODOLOGICAL ASPECTS
KEY FINDINGS OF ECOLOGICAL RELEVANCE
PERSPECTIVES
BIBLIOGRAPHY